Question: Validating Predictions Of Small Insertions / Deletions
0
gravatar for Ron
4.3 years ago by
Ron740
United States
Ron740 wrote:

Hi,

I have vcf files with indels which I created using GATK's Unified Genotyper.Is there any tool to vaildate those predictions?

Thanks

gatk variant • 1.1k views
ADD COMMENTlink modified 4.3 years ago by Charles Warden5.0k • written 4.3 years ago by Ron740
3
gravatar for Charles Warden
4.3 years ago by
Charles Warden5.0k
Duarte, CA
Charles Warden5.0k wrote:

Sanger sequencing would be the standard validation technique.

ADD COMMENTlink written 4.3 years ago by Charles Warden5.0k

Agreed. The only decent way to validate is experimental, not in silica

ADD REPLYlink written 4.3 years ago by zam.iqbal.genome1.6k
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