I am having a hard time installing CrossMap from UCSC. I am VERY new to coding. I updated my Python to v.3.9.2 this morning.
I am using the commands given by UCSC on how to install and use Crossmap. The first line "pip3 install CrossMap" results in this large Error:
"ERROR: Command errored out with exit status 1: /Library/Frameworks/Python.framework/Versions/3.9/bin/python3.9 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/9n/x6qkyx316jl0dbcmjxwhhjfc0000gn/T/pip-install-jxurijlf/pysam_4f7d7b6bde714233b1a7db1f1c017e48/setup.py'"'"'; __file__='"'"'/private/var/folders/9n/x6qkyx316jl0dbcmjxwhhjfc0000gn/T/pip-install-jxurijlf/pysam_4f7d7b6bde714233b1a7db1f1c017e48/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /private/var/folders/9n/x6qkyx316jl0dbcmjxwhhjfc0000gn/T/pip-record-8er7rord/install-record.txt --single-version-externally-managed --compile --install-headers /Library/Frameworks/Python.framework/Versions/3.9/include/python3.9/pysam Check the logs for full command output."
This may be very basic but I honestly don't have enough experience with Python or Bash to udnerstand what the error is trying to say. Thanks in advance for your advice!
You ran into the exact same error when libcurl was missing on Ubuntu? I find it hard to believe that the same error message occurred owing to a totally different cause on a different platform.