visualize phased vcf file
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6 months ago
yliueagle ▴ 240

Does anyone know which software allows visualize VCF file with phasing information? While a VCF file can be loaded in IGV, it does not have an option to display the phasing information (i.e., no difference between 0/1 and 1|0 or 0|1)

vcf phasing • 616 views
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6 months ago

I have only ever dealt with the results of whatshap phasing so I don't know if this is applicable but since you mentioned IGV, they have a description on how to use it to visualise their phasing results.

Hope it can be of help

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