visualize phased vcf file
2
0
Entering edit mode
3.0 years ago
yliueagle ▴ 290

Does anyone know which software allows visualize VCF file with phasing information? While a VCF file can be loaded in IGV, it does not have an option to display the phasing information (i.e., no difference between 0/1 and 1|0 or 0|1)

vcf phasing • 2.2k views
ADD COMMENT
1
Entering edit mode
ADD COMMENT
0
Entering edit mode
3.0 years ago

I have only ever dealt with the results of whatshap phasing so I don't know if this is applicable but since you mentioned IGV, they have a description on how to use it to visualise their phasing results.

Hope it can be of help

ADD COMMENT

Login before adding your answer.

Traffic: 1902 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6