Samtools view error: header include @SQ line missing LN tag.

Question

[Digimon]

After running minimap2 aligning .fastq to index .mmi creating .bam and pipeing the result into samtools view the above error ensues. What can I do abou it?

[GenoMax]

What is the exact command you used?

[Digimon]

minimap2 -t 40 -ax splice -k14 -u f --secondary=no input.mmi othr_input.fastq.gz | samtools view -Sb > othr_input.bam