Variant analysis for target NGS sequencing data?
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3.1 years ago
MSRS ▴ 580

Hi everyone,

We have illumina fastq files having target sequences (specific gene). We want to go for variant/SNP calling.

Helping with suggesting any types of pipeline/s tools will be highly appreciated.

Thank you

NGS Variants • 900 views
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What have you tried?

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I have tried Snippy. But It can process single sample at a time.

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What about samtools/bcftools/GATK?

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