Entering edit mode
3.5 years ago
MSRS
▴
590
Hi everyone,
We have illumina fastq files having target sequences (specific gene). We want to go for variant/SNP calling.
Helping with suggesting any types of pipeline/s tools will be highly appreciated.
Thank you
What have you tried?
I have tried Snippy. But It can process single sample at a time.
What about samtools/bcftools/GATK?