Create a phenotype file in PLINK format
1
0
Entering edit mode
7 days ago

Hi everyone,

how can i create a plink formatted phnotype data starting from an excel o text file? I have three columuns with FID IID and the phenotype. I tried several things, but nothing worked and I really need help.

I tried with

plink --pheno myfile --pheno-name columnwithpheno --out pheno

but is not working, it tells me "Error: No input dataset."

Does anyone have a solution?

Thanks

gwas phenotype plink • 80 views
ADD COMMENT
0
Entering edit mode
7 days ago
Sam ★ 3.5k

You always need to provide the bed / ped file from PLINK using either --bfile or --file. If you don't have those genotype data, then maybe better explain your intend? e.g. what are you trying to do?

ADD COMMENT

Login before adding your answer.

Traffic: 1838 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6