How to get Data from https://www.orthodb.org/ by the list of UniprotID
1
0
Entering edit mode
3.0 years ago
Trinh • 0

Hi everyone,

I have a list of proteins that I want to annotate.

I want to get description data from orthoDB by the list of UniprotID.

Please help me a way to do with R or python.

Thank you very much for your help!

orthoDB • 680 views
ADD COMMENT
0
Entering edit mode
3.0 years ago
GenoMax 141k

Looks like they make all the data available. You can download relevant files and then extract the data you need locally.

You can also search directly on their web page to get the results (EXAMPLE, links at top right of page allow download of sequences).

ADD COMMENT

Login before adding your answer.

Traffic: 4037 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6