Tutorial:Extracting genomic feature sequences from GTF/GFF files with AGAT
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15 months ago
Juke34 ★ 7.2k

First install AGAT:

conda create -c bioconda -n agat agat 
conda activate agat

Then enjoy possibilities of agat_sp_extract_sequences.pl, below exemplified

enter image description here

GFF corresponding to the record used as reference: enter image description here

extract GTF GFF sequence • 2.4k views
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A great toolkit in Perl, kudos for that!

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