Download whole 1000 genome phase 3 for LD clumping
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7 months ago
ahmed.abdo • 0

Dear all,

I need to download the whole 1000 genome phase 3 for European to perform LD clumping using Plink.

Where I can download it? and there will be separated by chromosomes? and then I should merge them?

I tried globus.org, but I could not find those related to variants.

Any idea how to download it please?

Thanks in advance

genomic plink • 377 views
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7 months ago
Vivek ★ 2.5k

There's a few options to download the phase 3 VCFs here, including the NCBI FTP site: ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp

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Thanks so much, but how download it, I click on the link and nothing appear.

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Most browsers have turned ftp protocol access off so you can no longer use FTP links.

You can instead use https://ftp-trace.ncbi.nih.gov/1000genomes/ftp/ to get to the link posted by @Vivek.

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Thanks, I did that

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