read ids along with transcript ids
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Entering edit mode
14 months ago

Hi,

I am interested in getting the read ids that are assigned to a particular transcript id for nanopore reads after using tools such as FLAIR (https://github.com/BrooksLabUCSC/flair) or stringtie (https://github.com/gpertea/stringtie) for read correction. Is there an easy way to get that.

Thanks

stringtie flair read correction nanopore • 431 views
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Entering edit mode
14 months ago
Shred ▴ 790

Your question was already answered here:

Extract Reads From A Bam File That Fall Within A Given Region

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