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4 months ago
jjp55 ▴ 20

Hi all,

I am trying to run the code

getDifferentialPeaksReplicates.pl -t Mock-1/ Mock-2/ Mock-3/ -i Mock-Control-1/ Mock-Control-2/ Mock-Control-3/ -genome tair10 > Mock-1_combine.txt


I am using HOMER and can see HOMER is installed and working (other packages within HOMER are working). When doing this code the first two steps work (Defining Peak Set and Quantifying reads) however the third step, calling R for differential enrichment statistics (-DESeq2) fails.

!!! R execution details:
Referenced from: /Users/jjp/miniconda3/lib/R/lib/libR.dylib


I am able to open the path to the file and see libR.dylib is in the R/lib/ directory.

Does anyone know any way to solve this problem?

dyld python R help • 889 views
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By any chance, are you working on Mac? This seems to solve it.

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I am on a Mac. I will take a look at the link and see if that solves it. Thank you!