I am trying to run the code
getDifferentialPeaksReplicates.pl -t Mock-1/ Mock-2/ Mock-3/ -i Mock-Control-1/ Mock-Control-2/ Mock-Control-3/ -genome tair10 > Mock-1_combine.txt
I am using HOMER and can see HOMER is installed and working (other packages within HOMER are working). When doing this code the first two steps work (Defining Peak Set and Quantifying reads) however the third step, calling R for differential enrichment statistics (-DESeq2) fails.
I receive the error message:
!!! R execution details: dyld: Library not loaded: @rpath/./libreadline.6.2.dylib Referenced from: /Users/jjp/miniconda3/lib/R/lib/libR.dylib Reason: image not found
I am able to open the path to the file and see libR.dylib is in the R/lib/ directory.
Does anyone know any way to solve this problem?