I come up with
syntax error near unexpected token `('
when I run
> #!/bin/bash > num1=$(paste <(gunzip -c $name1$ext) <(gunzip -c $name2$ext) | awk > '!((NR+2)%4)' | grep -cE $ligation)
the code is from countligations.sh in juicer pipeline for Hi-C analysis. I asked the developer who told me to update some of my command line version, but still I can't solve it. I assume this might be simply because of the shell script matter.
Can anyone help me to fix this?