how can i find expressions of miRNAs using TCGA
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3 months ago
cagdas ▴ 10

Hi,

I have 625 miRNAs, and I want to find their expressions (up/down regulated) using TCGA.

How can I make it?

Thanks

mirna tcga • 252 views
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You mean you want to check the differential expression of these miRNAs in Normal Vs. Tumor samples?

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Yes Nitin Narwade

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Usually, to test the difference in gene expression between two groups, I run Wilcox Test (a non-parametric test, which uses median to test the difference between two groups) using normal and tumor samples along with the fold change (using log2(median expression of a gene in each group)).

Maybe you can try something similar.

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