Entering edit mode
23 months ago
FadyNabil ▴ 10
I have many single end fastq files that I downloaded from SRA data base I want to align these files on each other to make a consensus genome that I will consider it as my reference genome how can I make this alignment by using python?
That is not how you create a consensus for a genome. You would either need to align to a reference and/or assemble the data.
but is there is a way to make alignment on these files without using ref genome by using python?
Aligning millions of fastq reads to each other makes no logical sense.
pythonis a programming language not a tool for analysis.