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20 months ago
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I am new to genomic sequencing and annotation and I have a genome that I was to bioinformatically check for plasmids.
I have PlasmidFinder installed, but my genome is Acinetobacter - and I don't think the database is appropriate (there is gram-positive and general eneterobacteria DB only).
Searching online I found PlasmidSeeker - the latesr db includes a list of Acinetobacter plasmids - is this the right/best tool for my analysis? Is there a better tool?
Any help would be appreciated,
https://academic.oup.com/nar/article/47/D1/D195/5149885 https://academic.oup.com/bioinformatics/article/32/22/3380/2525610 https://www.frontiersin.org/articles/10.3389/fmicb.2017.00182/full
You can read a few recent article about plasmid identification.
Thanks! That's very helpful