I got this dataset from geo and was all in one mtx file and I was wondering if is possible to change the orig.ident and group It into controls and diseases.
For Example: Group F00202-F01394 to Control, ILd53-63 Disease1, HD65-HD70 Disease2
Do you have the information which cells belong to control and disease, so is this a question on how to use Seurat for renaming or on how to identify which genes are control and disease?
I have the mtx file and the excel file from the geo database to know which sample correspond to control or disease. The problem is theey upload just one mtx filefor all the samples. The other datasets I was using each sample has his own mtx files and is easy to group.
So it comes down to changing some annotations? See https://satijalab.org/seurat/articles/essential_commands.html and https://github.com/satijalab/seurat/issues/1966
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