reference genome for mmu.gff3 (mirbasev22)

Question

[clizama]

Hi,

I'm trying to do some miRNA analysis, I'm using the mmu.gff3 annotation file from mirBASE but I'm not sure where I can get the reference genome for the alignment that match to the mmu.gff3 file.

Thanks

[Hyper_Odin]

https://genome-euro.ucsc.edu/cgi-bin/hgGateway?redirect=manual&source=genome.ucsc.edu

[clizama]

yeap is mm10, however I'm not sure if should use the one from UCSC, ensembl or other source.

[Hyper_Odin]

https://mirbase.org/help/genome.shtml

Difference between UCSC and Ensembl genomes