Hello, everyone !
Studying STAR manual, I learned that multiple samples can be mapped at once with parameters.
For paired-end reads,
--readFilesIn sample1read1.fq,sample2read1.fq sample1read2.fq, sample2read2.fq
But I have done multiple mapping with "for" loop until now. That is, mapping have been done one by one.
Multiple samples mapping at once using parameter
Multiple samples mapping one by one using "for" loop
if I use the same number of Threads, Which way is more efficient?