I am trying to run snippy on my UBUNTU18 (inside a conda env that has this tool installed) but am getting an error:
Can't locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO.pm module)
I checked the posts here, and tried therefore to install BioPerl using:
sudo apt install bioperl
-> bioperl is already the newest version (1.7.2.-2)
Then I tried:
--> I get multiple "bailing" errors...
I think (I might be wrong) that there is something off with my path but I can't figure out what it is. the path reads:
Any help would be greatly appreciated,
I tried that too - I opened the env where snippy is installed and ran
I get a msg: "All requested packages are already installed"
Then I ran: which perl
then I ran snippy to get the same error msg. "Can't locate BioPerl.pm in @INC"
But I did manage to fix it, using your idea - I opened a new env for snippy and installed both bio-perl and snippy from bioconda directly and now it works! so thank you!
I had the same problem and i fixed it by installing perl-bio-featureio https://anaconda.org/bioconda/perl-bio-featureio Cheers