Download mRNA fasta sequence for all proteins in the escherichia coli mg1655 genome
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28 days ago
Mark • 0

Hi,

I am looking for a way to download the fasta sequence of all protein coding mRNA in the escherichia coli genome.

Does anyone know a simple way to do this. I would be most comfortable with python but can use a shell script.

thank you in advance

python Escherichia coli genome • 191 views
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28 days ago
JC 12k

No need for python or any script:

  1. Go to https://www.ncbi.nlm.nih.gov/nuccore/NC_000913.3
  2. Select "Send to" -> "Coding sequences"
  3. Select FASTA for nucleotides or proteins
  4. Click on "Create File"
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thank you, that was very helpful.

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28 days ago
GenoMax 107k

Another option. Download CDS sequences directly from NCBI FTP site. If you need translated proteins then those are available as well.

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