How can I convert ensembl exon ID to gene symbol in a gene count dataframe?
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5 weeks ago
istiaqarif • 0

I have an HTseq count file with a row containing exon ids and columns are exon counts. I need to convert them into gene IDs, given the fact that multiple exon ids may be mapped to the same gene. Please help me with the R codes and necessary tool suggestions.

HTseq scRNAseq Ensembl RNAseq • 196 views
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I'd use biomart. Or, of course, rerun htseq count to output what you want.

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5 weeks ago

You could use the Ensembl REST API. You can use the lookup/id endpoint. Take a look at this online course for example code you can use.

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