Herald:The Biostar Herald for Tuesday, October 05, 2021
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The Biostar Herald publishes user submitted links of bioinformatics relevance. It aims to provide a summary of interesting and relevant information you may have missed. You too can submit links here.

This edition of the Herald was brought to you by contribution from Istvan Albert, and was edited by Istvan Albert,


pyrpipe: a Python package for RNA-Seq workflows (www.ncbi.nlm.nih.gov)

pyrpipe: a Python package for RNA-Seq workflows

see also:

https://github.com/urmi-21/pyrpipe

submitted by: Istvan Albert


RNACocktail (bioinform.github.io)

A comprehensive framework for accurate and efficient RNA-Seq analysi

submitted by: Istvan Albert


GitHub - Ranlot/single-parameter-fit: Real numbers, data science and chaos: How to fit any dataset with a single parameter (github.com)

An amusing piece of mathematical ingenuity

Real numbers, data science and chaos: How to fit any dataset with a single parameter

submitted by: Istvan Albert


Technology dictates algorithms: recent developments in read alignment | Genome Biology | Full Text (genomebiology.biomedcentral.com)

We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. We discuss how general alignment algorithms have been tailored to the specific needs of various domains in biology.

submitted by: Istvan Albert


Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets | BMC Genomics | Full Text (bmcgenomics.biomedcentral.com)

However, standard pre-processing, including the alignment and cell filtering pipelines might not be ideal for every organism or tissue.

submitted by: Istvan Albert


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