How to find/extract sequences of protein coding genes and Transposable elements from rice transciptome.gtf file ?

Question

[isha.lily20]

Hello researchers,

i am stuck'ed in project, required effective solutions,

1) how to find out protein coding genes and transposable elements from rice transcriptome.gtf file ?

2) how to extract out protein coding genes and transposable elements from rice transcriptome.gtf file ?

thank you

[GenoMax]

This toolkit will help: Extracting genomic feature sequences from GTF/GFF files with AGAT