Question

gVCF Annotation

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3.0 years ago

GiV17 ▴ 50

Hi, I have a serious question, I have a gvcf and I need to reconstruct the haplotype of the sample. How can I Annotate my gvcf? Through which software? Thanks

gvcf Annotation Variant • 1.8k views

ADD COMMENT • link updated 3.0 years ago by Emily 24k • written 3.0 years ago by GiV17 ▴ 50

score 0 · Answer 1 · 2021-11-04

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3.0 years ago

Emily 24k

The haplosaurus package which is part of the VEP, does this.

ADD COMMENT • link 3.0 years ago by Emily 24k

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Sorry, but I can't find it, would you give me the link?

ADD REPLY • link 3.0 years ago by GiV17 ▴ 50

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And does this package need to be installed on a linux/Unix (Ubuntu) system?

ADD REPLY • link 3.0 years ago by GiV17 ▴ 50

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The VEP can be installed on all different kinds of systems and there are different ways to do this. Full installation instructions here

ADD REPLY • link 3.0 years ago by Emily 24k

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Does the link in my post not work?

ADD REPLY • link 3.0 years ago by Emily 24k

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Yes, it doesn't work.

ADD REPLY • link 3.0 years ago by GiV17 ▴ 50

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fixed it now

ADD REPLY • link 3.0 years ago by Emily 24k