I am trying to create index using salmon for human Genome (not transcriptome). The version of salmon I am using is : salmon
The command I used is :
salmon index \ -t /hg38_genome/GRCh38.p13.genome.fa \ -i index
The main error I am getting is:
Command error: [2022-01-26 12:20:19.647] [jointLog] [warning] Entry with header [KI270896.1] was longer than 200000 nucleotides. Are you certain that we are indexing a transcriptome and not a genome?
If I use transcriptome file instead of genome, it works perfectly and returns the index files. I got both
genome from the
For my analysis I need to use genome. do you know how I can use genome?