Germline2 IBD
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13 months ago
Alexandra ▴ 20

Hi all!

I've performed an IBD analysis by Germline2 software, resulting in OUT.match file. Now, I want to plot this results but I don't know how. Any of you knows a R script which can I use to plot the IBD-sharing?

Also, I'm looking for a way to compare the IBD-sharing between populations rather than within populations. Is there a way to compute that?

relatedness IBD Germline2 • 395 views
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Oh! I forgot to mention that the output file contains:

-ID1
-ID2
-P0
-P1
-cM (Length IBD segment)
-words
-gaps