How to make a diagram of a gene?

Question

[amy__]

Hi I was wondering if anyone knew how to make gene diagrams like this:

I can't find an email for the author so thought I'd ask on here, and also if possible, where you would find the labels associated with the gene (like oligomerization domain).

https://doi.org/10.2147/TACG.S51484

Thanks!

[Pierre Lindenbaum]

Gene Drawing At Scale

Is There Any Tool For Drawing A Gene/Protein Diagram?

Help with Creating Gene Diagram for Research Article

....

[Dunois]

Check out seqvisr. pdomvisr() comes close to what you're looking for, I think.

[amy__]

Ooo thank you!

[amy__]

Hi Dunois, I was just wondering if you knew where people find the information and labels to go on the gene diagrams? Thanks! Amy

[Dunois]

Hi, are you asking for pdomvisr()? Those details need to come in the form of an annotation table. For example from InterProScan. I can offer more concrete suggestions if you can give me more details.

[amy__]

Hi Dunois, InterProScan is the type of thing I was after, thank you!

[Dunois]

You're welcome. So if you're going to use pdomvisr() with InterProScan, take a look at the help vignettes first. The function requires you to modify the tabular output a bit in order for pdomvisr() to be able to process it.