Checking correlation on raw fastq data without aligning
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2.2 years ago
agata ▴ 10

Maybe a stupid general question - is it any tool available that would allow for checking the correlation between raw fastq files of biological replicas?

Do I have to always first align reads to reference and then use e.g DeepTools/DeSeq2 packages to obtain information about the correlation of the samples?

correalation fastq • 437 views
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could you define what you mean by correlation in this context?

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