Low number of differentially expressed genes in scRNAseq
0
0
Entering edit mode
2.2 years ago
Darya • 0

I generated a list of DE genes (p-value < 0.05 and |LFC| > 0), the result shows only 8 upregulated genes which I think is a low number. My question is, can this low number of DEGs between two conditions in scRNAseq represent anything? If yes, what?

DEgenes scRNAseq DE analysis • 565 views
ADD COMMENT
1
Entering edit mode

That is impossible to answer without more context on the experiment and the DE strategy you used.

ADD REPLY
1
Entering edit mode

It depends obviously on multiple things for example the way reads are mapped and handled as well as the experiment design. As @ATpoint mentioned more information is needed to address your concern.

ADD REPLY

Login before adding your answer.

Traffic: 1736 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6