Question: Read File Format .Bam
0
gravatar for hudarembang
6.3 years ago by
hudarembang0 wrote:

My research is related to the manufacture of snp database. constraints that occurs is how to read the file. bam. in this case, I want to take the data from the file. bam whose content is an alignment. whether the file. bam it compressed? if I open it using notepad++, the data unreadable.

database snp • 2.0k views
ADD COMMENTlink modified 6.3 years ago by Pierre Lindenbaum129k • written 6.3 years ago by hudarembang0

A very useful post about bam files: http://davetang.org/muse/2014/03/06/understanding-bam-flags/

ADD REPLYlink modified 9 months ago by RamRS27k • written 6.3 years ago by Jimbou750
2
gravatar for Pierre Lindenbaum
6.3 years ago by
France/Nantes/Institut du Thorax - INSERM UMR1087
Pierre Lindenbaum129k wrote:

It's bgzf compressed : http://samtools.github.io/hts-specs/SAMv1.pdf

ADD COMMENTlink written 6.3 years ago by Pierre Lindenbaum129k
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