STAR ALIGNMENT PARAMETERS FOR RNA-SEQ OF THE PLANT SAMPLE ?
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2.1 years ago
Meeran ▴ 10

Hi, I am trying to perform differential gene expression analysis for the RNA-seq sample of Solanum tuberosum and I have chosen to use STAR for the alignment and Gene count quantification. Can anyone suggest me the parameters to consider in STAR for the alignment purpose or is it ok to go with default parameters?

Differential expression transcriptome gene aligner analysis RNA-Seq STAR Plant • 323 views
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