Genome Reference Consortium Human Build - Transcriptome Size Query

0

Entering edit mode

23 months ago

Oligo96 • 0

Hi All,

I was wondering where I might find the approximate transcriptome size of the latest Genome Reference Consortium Human Build (GRCh38.p14)?

https://www.ncbi.nlm.nih.gov/assembly/GCF_000001405.40

Thanks for your help!

GRC • 795 views

ADD COMMENT • link updated 13 months ago by Ram 43k • written 23 months ago by Oligo96 • 0

2

Entering edit mode

This page will be a good starting point: https://www.ncbi.nlm.nih.gov/data-hub/taxonomy/9606/

ADD REPLY • link 23 months ago by vkkodali_ncbi ★ 3.7k

0

Entering edit mode

Thank you!

ADD REPLY • link 23 months ago by Oligo96 • 0

1

Entering edit mode

You don't have to estimate it. Download the latest and most up-to-date transcripome annotation for human, e.g. from GENCODE https://www.gencodegenes.org/human/ and then simply count what you would like to know, be it number of genes, total bases, number of transcripts, exons, you name it.

ADD REPLY • link 23 months ago by ATpoint 81k

0

Entering edit mode

Thanks! Do you recommended any resources that will enable me to explore and pull readouts from GTF files?

ADD REPLY • link 23 months ago by Oligo96 • 0

Login before adding your answer.