GWAS and QTL analysis bioinformatics tutorial from scratch

Question

[Dr.Animo]

Hi,

Is there any freely available GWAS and QTL analysis bioinformatics comprehensive tutorial? The tutorial teaches the best practice from scratch such as in RNA-Seq, we have raw fastq files, then we clean it and ma[ to the reference genome, gene abundance counting, DGE testing, and functional annotation of DGEs.

I have read the following posts:

• Gwas Stepwise Tutorial
• Need Recommendation On Good Tutorials For Performing Gwas
• GWAS - QC & Tutorials.

But these posts cover the theoretical aspects, not the bioinformatics pipeline.

Thanks