Annotate list of Ensembl genes
1
1
Entering edit mode
4 weeks ago
Kermit ▴ 80

I have a list of human genes and I would like to annotate them (e.g. GTeX, ClinVar, GWAS Catalog).

I have their Ensembl IDs: e.g. ENSG00000165916.8

Is there an open source package or online tool I can use to return a table of helpful annotations?

gene functional-annotation • 431 views
ADD COMMENT
0
Entering edit mode

You asked numerous question on this site without validating any answer. Please take a few minutes to validate (green mark on the left) and close the good answers.

ADD REPLY
0
Entering edit mode

How am I expected to know what the right answer is? This isn't like code where if it runs and it's simple, then it is the answer. I get how that works: https://stackoverflow.com/users/5739514/kermit The system is broken

ADD REPLY
0
Entering edit mode

well for example, you could validate Genomax's answer What are GL*.* values in chr column of rna seq counts? , my answer VCF - what are overlapping variants? , etc.. , etc..

ADD REPLY
0
Entering edit mode
5 days ago

gget info!!! https://github.com/pachterlab/gget

ADD COMMENT

Login before adding your answer.

Traffic: 2237 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6