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Where to find expected copy number for a gene
genomics
updated 4 months ago by 154k • written 4 months ago by ▴ 90
1
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2
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1.4k
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Liftedover vcf header/contig compatibility
crossmap vcf bcftools liftover contig
updated 2.3 years ago by ▴ 630 • written 2.3 years ago by ▴ 90
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2.3k
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Comment: Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
2.3 years ago by LayneSadler ▴ 90
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0
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20k
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Comment: Comment: Mapping Ensembl Gene IDs with dot suffix
2.3 years ago by LayneSadler ▴ 90
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0
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27k
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Answer: Answer: Convert Ensembl Transcript Ids Ensmust To Gene Symbol Using Mygene Module In Pyt
2.3 years ago by LayneSadler ▴ 90
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3.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
2.3 years ago by LayneSadler ▴ 90
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1
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3.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
2.3 years ago by LayneSadler ▴ 90
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1
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3.1k
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Comment: Comment: Quantify Isoforms in RNA-Seq data
2.3 years ago by LayneSadler ▴ 90
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0
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4.1k
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Comment: Comment: STAR-Fusion: Problem in interpreting
2.3 years ago by LayneSadler ▴ 90
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0
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5.8k
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Comment: Comment: Must paired-end reads be in the same order in the two files for input to Tophat?
2.3 years ago by LayneSadler ▴ 90
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0
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40k
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Comment: Comment: Sjdboverhang Option In Star
2.3 years ago by LayneSadler ▴ 90
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1
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3.4k
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Comment: Comment: bbsplit running slow or out of memory?
2.3 years ago by LayneSadler ▴ 90
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1
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3.4k
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Answer: Answer: bbsplit running slow or out of memory?
14 months ago by LayneSadler ▴ 90
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0
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46k
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Comment: Comment: How to know that your RNA-seq is stranded or not?
2.3 years ago by LayneSadler ▴ 90
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1
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46k
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Answer: Answer: How to know that your RNA-seq is stranded or not?
2.3 years ago by LayneSadler ▴ 90
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0
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9.6k
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Comment: Comment: bbmap split paired-end reads back into separated fastq files?
2.3 years ago by LayneSadler ▴ 90
0
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1
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17k
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Comment: Comment: How to identify 16s sequences from binning data(contigs)?
2.3 years ago by LayneSadler ▴ 90
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3
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1.5k
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Removing overrepresented sequences in paired end RNA-seq
cutadapt rna-seq trimgalore
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 90
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0
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1.5k
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Answer: Answer: Removing overrepresented sequences in paired end RNA-seq
2.3 years ago by LayneSadler ▴ 90
0
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0
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1.5k
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Comment: Comment: Removing overrepresented sequences in paired end RNA-seq
2.3 years ago by LayneSadler ▴ 90
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0
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13k
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Comment: Comment: removing overrepresented sequences from rna-seq
2.3 years ago by LayneSadler ▴ 90
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0
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39k
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Answer: Answer: FastQC command line usage
2.3 years ago by LayneSadler ▴ 90
2
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1
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924
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Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna ncRNA transcriptome pseudogene rna-seq
updated 2.4 years ago by 13k • written 2.4 years ago by ▴ 90
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0
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3.2k
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Comment: Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
2.4 years ago by LayneSadler ▴ 90
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1
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92k
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Comment: Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
2.4 years ago by LayneSadler ▴ 90
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1
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6.6k
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Answer: Answer: VEP output has no gene names
2.4 years ago by LayneSadler ▴ 90
0
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7
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3.5k
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Why are some WES VCFs larger than others?
WES sequencing genomics NGS exome
2.4 years ago by LayneSadler ▴ 90
0
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0
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51k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
2.4 years ago by LayneSadler ▴ 90
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0
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51k
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Comment: Comment: How to filter vcf file on minimum genotype depth and quality for each sample
2.4 years ago by LayneSadler ▴ 90
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0
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3.5k
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Comment: Comment: Why are some WES files larger than others?
2.4 years ago by LayneSadler ▴ 90
0
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2
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3.5k
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Answer: Answer: Why are some WES VCFs larger than others?
2.4 years ago by LayneSadler ▴ 90
0
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0
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3.5k
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Comment: Comment: Why are some WES files larger than others?
2.4 years ago by LayneSadler ▴ 90
0
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0
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35k
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Answer: Answer: Rna-Seq Pipeline
2.5 years ago by LayneSadler ▴ 90
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0
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2.2k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.6 years ago by LayneSadler ▴ 90
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0
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2.2k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
2.6 years ago by LayneSadler ▴ 90
0
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3
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1.4k
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How many basepairs are genes padded by in WES?
NGS sequencing WES exome
updated 2.7 years ago by ▴ 290 • written 2.7 years ago by ▴ 90
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1
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1.4k
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Comment: Comment: How many basepairs are genes padded by in WES?
2.7 years ago by LayneSadler ▴ 90
0
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1
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23k
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Comment: Comment: Apple M1 processor for bioinformactics
2.9 years ago by LayneSadler ▴ 90
3
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4
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1.6k
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Annotate list of Ensembl genes
gene functional-annotation
updated 3.1 years ago by ▴ 450 • written 3.2 years ago by ▴ 90
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0
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3.2k
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Comment: Comment: VEP outputs the similar INFO CSQ data multiple times
3.1 years ago by LayneSadler ▴ 90
0
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0
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38k
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Comment: Comment: Snp Quality In Vcf File
3.1 years ago by LayneSadler ▴ 90
0
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0
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15k
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Comment: Comment: Illumina cpg probe ID conversion to chromosomal location?
3.1 years ago by LayneSadler ▴ 90
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0
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1.0k
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Comment: Comment: Do LoF/GoF count toward transcript count?
3.2 years ago by LayneSadler ▴ 90
2
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2
replies
1.0k
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Do LoF/GoF count toward transcript count?
expression rna-seq rna
3.2 years ago by LayneSadler ▴ 90
0
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0
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7.4k
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Comment: Comment: problem in EnsemblID to gene symbol conversion in TCGA data
3.2 years ago by LayneSadler ▴ 90
0
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1
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1.6k
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Comment: Comment: Annotate list of Ensembl genes
3.2 years ago by LayneSadler ▴ 90
0
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0
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1.9k
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Comment: Comment: TCGA - Is vital_status subject to follow_up duration?
3.2 years ago by LayneSadler ▴ 90
1
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2
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1.9k
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TCGA - Is vital_status subject to follow_up duration?
phenotype cohort prognostic survival tcga
3.2 years ago by LayneSadler ▴ 90
0
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0
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2.2k
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Comment: Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
3.2 years ago by LayneSadler ▴ 90
2
votes
8
replies
2.2k
views
If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA miRNA sequencing RNA-seq
2.6 years ago by LayneSadler ▴ 90
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