Running several rounds of the same rule in Snakemake
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21 months ago
shjenkins94 ▴ 10

I'm writing a workflow and there are several parts where I have to run several rounds of the same rule Something like this

Input 1 -> Same Rule -> output1/input2 -> Same Rule -> output2/input3 -> Same Rule -> output3/input4

Ideally I would like to just use one Rule for this instead of having multiple very similar rules. Is there a good way to do this?

snakemake • 641 views
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Add more details about what you're supposing to do with some toy examples.

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