How to generate pathway analysis report for a list of proteins
1
0
Entering edit mode
17 months ago
anasjamshed ▴ 120

I have a list of genes in a text file and I want to create a pathway enrichment report by using python or R like this:

pathway example

I tried Bio.KEGG module of python but did not get successful. Can anyone help me?

python R • 637 views
ADD COMMENT
2
Entering edit mode
17 months ago

There are quite a few Bioconductor packages that can do pathway analysis (e.g. clusterProfiler to give just one), sometimes with overlapping features or targeting a specific use case or data type, just search a bit.
You may also be interested in these articles:

ADD COMMENT
0
Entering edit mode

Is there any package exists in python similar like this>?

ADD REPLY

Login before adding your answer.

Traffic: 3156 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6