we have a dataset consisted of a lot of genes and their respective information (like expression). We would like to make a picture to cluster those genes first on their GO terms (gene function) and then on our expression input that we have. Hence, how can I cluster those genes based on their GO terms? Do you have any suggestion?
We are currently programming in R and we would like a R package to solve the problem. We have looked at topGO but that does not give the information we are looking for. Since only uses a small set of the total number of genes.
thanks in advance for your help