Entering edit mode
7 months ago
heskett ▴ 110
Hi all! I have a bunch of CNA segment files from multiple samples and want to compare them, problem is all the segments have different start and stop sites in each sample. Is there a one liner pre-built tool to get a new list of segments that covers all the segments from each sample? For example see drawing:
i think this is it!
Okay I looked into it Pierre. This counts the number of files that have segments at each location, but it doesnt report features at each interval that I am interested in like copy number in this example. But I guess it does give the intervals that I want, so i could then do some kind of bedtools map or bedtools intersect to get the CN values from each file after that. thanks