download gnomad data using wget in linux
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18 months ago
Eliza ▴ 30

I'm new to using linux. What I want is to download data from gnomad for example this data:

chrY sites VCF
15.66 MiB, MD5: fa412becb3aba27b9acf2529bb76b895
Download from Google / Amazon / Microsoft
Download TBI from Google / Amazon / Microsoft

Link: https://gnomad.broadinstitute.org/linux

How do I do this, what is the command when using linux? I know that I should use

wget -O - 

but after that I'm not sure what to do.

Thank you:)

vcf unix ubuntu linux gnomad • 754 views
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Entering edit mode
18 months ago
GenoMax 142k

You can do

wget -O gnomad.exomes.r2.1.1.sites.Y.vcf.bgz https://storage.googleapis.com/gcp-public-data--gnomad/release/2.1.1/vcf/exomes/gnomad.exomes.r2.1.1.sites.Y.vcf.bgz
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Thank you very much :)worked

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