Hi everyone I am new to single cell analysis
I need to create fastq file from BCL
My code in bash file look like-
cd /project/shikhasi/project/apps/cellranger-6.1.2/cellranger mkfastq --id=20_10x \ --run=/project/yard/20_10x/2_BHHNTLDRXY \ --csv=/project/yard/20_10x/cellranger-20210813_10x-bcl-simple-1.2.0.csv
But I can't able to get out file I make sure the the directory of my file but still it is not working.
Could anyone please help me out.
Any suggestion will highly appreciated.