How to cross-check the mapping % quality of reads

Question

[rj.rezwan]

Hi, I have successfully mapped the 56 accessions of dragon fruits on the reference genome (1.41 GB), and bamtools calculated the number of reads and mapping %. All accessions are mapped to the reference genome from 97 to 99%. I have also shared a screenshot of an accession for 4 chromosomal coverage and the mapping summary for observation. I want to ask are the given results good enough to go for the next step or there is something wrong here? Please share your helpful comments:

Answer 1

[GenoMax]

I want to ask are the given results good enough to go for the next step

These results are good for any type of analysis you may be interested in doing.