Processed RNA seq data publicly available

Question

[Nemo]

Hi, I am doing a research work with pathway analysis. I need to download some RNA seq datasets. It would be great if they are already processed. I would be thankful if anybody can introduce RNA seq datasets.

Answer 1

[ATpoint]

BioJupies can do some simple analysis and (if you ignore all of the analysis as I do), at some point offers to download a count matrix and metadata, so that is "processed". It's a good resource to get these sorts of data.

Answer 2

[jared.andrews07]

The recount project is also useful for yoinking uniformly processed stuff.

Answer 3

[Gordon Smyth]

GEO is a huge repository of datasets, many of which are RNA-seq. All datasets provide processed data although the format is up to the depositer. My Lab always uploads count matrices, for example

• https://ftp.ncbi.nlm.nih.gov/geo/series/GSE220nnn/GSE220498/suppl/GSE220498_GenewiseCounts.txt.gz
• https://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176111/suppl/GSE176111_GenewiseCounts.tsv.gz

Answer 4

[Zhilong Jia]

GREIN : GEO RNA-seq Experiments Interactive Navigator

GEOexplorer