Mean read length from a fastq file
1
0
Entering edit mode
2.0 years ago
shinyjj ▴ 50

Hi biostars, I have a question about calculating the median read length from a fastq file. Is there a way to calculate this using samtools or awk? Are there any command lines for these two?

fastq samtools awk • 568 views
ADD COMMENT
0
Entering edit mode
ADD COMMENT

Login before adding your answer.

Traffic: 4402 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6