Entering edit mode
8 weeks ago
Hayler Edu ▴ 30
Today I am analyzing SNP type variants in the species pimelodus yuma. Now what I want to do is use variant effect predictor to check the effect of the found SNPs.
Could someone recommend which predictors I can use in fish?
if you have a GTF/GFF3 associated to your fish, you can use almost any classical predictor: VEP, snpeff, bcftools csq etc...