Entering edit mode
8 weeks ago
Ankit ▴ 390
I have a matrix (800 X 800) dimensions as follows:
TF1 TF2 40.6 TF3 TF2 90.5 TF2 TF2 1.33 TF4 TF1 28.9 TF1 TF3 200.1 TF3 TF9 106.1
I want to find interaction between all possible TFs using scores (3rd column) and get
1). Clusters 2). Predict new/known complexes, 3). Plot network of protein of interest
I would appreciate any leads. Thank you
Have you looked at any tutorials? Three are many out there. (1, 2, 3, etc.) Do you have a preferred language?
Thanks for the response
I tried to use gephi and cytoscape but since I have no experience with these tools I could not use it properly. Can you suggest if it is possible to use these softwares for my data type .