Copy Number Variants, where to start?
0
0
Entering edit mode
21 months ago
paolo ▴ 70

I am searching for a tool for CNV annotation that accepts as input a VCF file.

CNV annotation • 683 views
ADD COMMENT
0
Entering edit mode

what did you find so far ?

ADD REPLY
0
Entering edit mode

I have found autoCNV, inCNV, and ClassifyCNV. The second one is for exomic CNVs only, and the third one does not run on Windows, but it might be the best one. I will start with the first one: autoCNV. What is not clear yet, is whether the software can handle thousands of CNVs or if you have to submit one at a time instead (as in the web interface).

If someone knows of a better option, please let me know.

ADD REPLY

Login before adding your answer.

Traffic: 1481 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6