Hordeum genes annotation
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Entering edit mode
15 months ago
martta95 ▴ 10

Hello,

I have list of transcript mapped to Hordeum vulgare genome, eg:

HORVU.MOREX.r2.UnG0628590.1
HORVU.MOREX.r2.5HG0361000.1
HORVU.MOREX.r2.UnG0628880.1
HORVU.MOREX.r2.UnG0634500.1
HORVU.MOREX.r2.UnG0633590.1
HORVU.MOREX.r2.6HG0466780.1
HORVU.MOREX.r2.UnG0635240.1
HORVU.MOREX.r2.UnG0634160.1
HORVU.MOREX.r2.UnG0634110.1
HORVU.MOREX.r2.1HG0022820.1
HORVU.MOREX.r2.UnG0628630.1
HORVU.MOREX.r2.2HG0159250.1
HORVU.MOREX.r2.7HG0559940.1
HORVU.MOREX.r2.1HG0030360.1
HORVU.MOREX.r2.1HG0074980.1
HORVU.MOREX.r2.5HG0417680.1
HORVU.MOREX.r2.2HG0172880.1

I would like to annotation about gene names, function, and protein that encode e.g.,

HORVU.MOREX.r2.1HG0022820.1,Hordeum vulgare subsp. vulgare 5.8S ribosomal RNA (LOC123422461), F2ECJ1, Predicted protein GO:0000166, nucleotide binding

What tool can I use?

protein hordeum annotation genes • 561 views
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Entering edit mode

A simple solution would be to get the Hordeum GFF file from Ensembl here. Column 9 in the file has most of the info you are looking for except perhaps the GO categories.

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