is this good atac seq counts
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Entering edit mode
14 months ago
alwayshope ▴ 40

Dear guys,

Below is the ATAC seq counts by featureCounts, Is it good or not so good? As the assigned are much less than unassigned...

Thanks a lot!

Assigned        944998
Unassigned_Unmapped     0
Unassigned_Read_Type    0
Unassigned_Singleton    0
Unassigned_MappingQuality       0
Unassigned_Chimera      0
Unassigned_FragmentLength       0
Unassigned_Duplicate    0
Unassigned_MultiMapping 14625782
Unassigned_Secondary    0
Unassigned_NonSplit     0
Unassigned_NoFeatures   51415276
Unassigned_Overlapping_Length   0
Unassigned_Ambiguity    250
ATAC-seq • 432 views
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Entering edit mode

I've seen better, lets say it like this. Lots of unassigned reads, can indicate lots of noise. Check on a genome browser how data look, then you know.

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