Hi salmon users,
Can someone help me interpret salmon output? I ran salmon with one short read sample and see most of its TPM level is 0. I see 150653 among, 252045 is 0. Does this mean, for this specific sample, it's relative transcript abundance is very low or did I miss something? Is it normal to have the majority of the transcript to have low TPM level or is there a way to increase TPM?
Show us also the log file. Those quantification are relatives to transcripts: it seems legit.
hi shred, are you asking for salmon_quant.log file? There are other log files as well in index.
Here is the log file of the salmon_quant.log file